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RNA Structure Viewer
Predict secondary structure and assess ASO accessibility
Input Sequence
0 nucleotides
Example Sequences
Why RNA Structure Matters for ASO Design
ASOs bind most efficiently to single-stranded, accessible regions of target RNA. Regions involved in stable secondary structures (stems) are harder to target. Use this tool to identify optimal binding sites with high accessibility scores.
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Enter a sequence and click "Predict Structure" to analyze